rs254193259 SNP Detail

Summary

• ID
  rs254193259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184545457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGTAGGA GAGACTCGCA
  CTTATTAATG ACAATGGAAC CACACAGCTG TAAGAGAGCT AACTCGGCTC CATGTTAACT
  TAGTGTTTGT ACTGTTACTG CAAGCTAGTG CATCATCCTG TGCTACCGTG AGCCTTTAAG
  ACTGAGTTCA TGGTTTCTCC TTGTTCCTTC TTCCGAAGGA AGATTCCATT CCTTTAAGGT
  Y
  CACTCTCTTG TAGAATTGGA AGAATTCACA ATTATAGATA AGTTCTACCT GTCTTGATAG
  GAACAGAATG AAATGTAAAG CCACAGTCTA TGAACAAAAT AACCCCATGA CCTCTGAAGT
  CATTTCTGTA TGTAAGCATA CTTCTATAAC AGCAAGGTAA ACAATAATGA AACCAAACTC
  AGCAGGGCTC AACAGCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352675777	MGP_WTSI_1_186637139	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254193259					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352675777	MGP_WTSI_1_186637139	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184545457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	1923 bp distal
Gm70890	predicted gene, 70890	398 bp downstream
Mtarc2	mitochondrial amidoxime reducing component 2	mRNA-UTR
Rr425290	regulatory region 425290	1326 bp distal
Rr425291	regulatory region 425291	820 bp distal
Rr425292	regulatory region 425292	891 bp distal
Rr425293	regulatory region 425293	743 bp distal
Rr425294	regulatory region 425294	1185 bp proximal
Tssr15653	transcription start site region 15653	1996 bp upstream
Tssr15654	transcription start site region 15654	1957 bp upstream
Tssr15655	transcription start site region 15655	1946 bp upstream