rs254193720 SNP Detail

Summary

• ID
  rs254193720
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71640275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATCAAA AGATGGCCTA
  ATCAGCCATC ACTGGAAAGA GAGGCCCATT GGACACGCAA ACTTTATATG CCCCAGTACA
  GGGGAACGCC AGGGCCAAAA TAATGGGAAT GGGTGGGTAG GGAAGTGGGG GGGGGAGAGT
  ATGGGGGACT TTTGGGATAG CATTGGAAAT GTAATTGAGG AAAATATGTA CTAAAAAATT
  W
  AAAAAATTAT ACCTTTGCAT CTTGGATAAT TTGTTTGTTT GTTTGTTTTT TGCCACTGGA
  CCCTATAAAT TATGCAGTCA GTCCTGAAGA GGGTTCAAAC ACAAGACAAC ATTGCAAGAG
  GATTCATTGA GTTACAGCTG ATAACAATGA TTAAAGGCTA TGCAGAGGAT ACTTTCTTTG
  CAGGCCTGGA ATGCTGAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383831595	MGP_WTSI_11_71562951	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254193720					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383831595	MGP_WTSI_11_71562951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71640275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	969 bp proximal
Rr236016	regulatory region 236016	126 bp proximal
Rr241547	regulatory region 241547	475 bp distal
Rr247127	regulatory region 247127	325 bp proximal
Tssr102813	transcription start site region 102813	465 bp upstream
Tssr102814	transcription start site region 102814	1231 bp upstream
Tssr102815	transcription start site region 102815	1533 bp upstream
Tssr102816	transcription start site region 102816	1549 bp upstream
Tssr102817	transcription start site region 102817	1607 bp upstream
Wscd1	WSC domain containing 1	471 bp upstream