rs254199627 SNP Detail

Summary

• ID
  rs254199627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7356317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTTCAT TTACATTTCA
  AATGCTACCC TGAAATTCCC CCACTTCCTC CCCCTGTTCT GCTCCCCAAC CCACCCACTC
  CAGCTTCCTG GCCCTGGCAT TCCCCTGTAC TGGGGCATAT GATCTTCCAA GGGCCTCTCC
  TCCCATTGAT GGCCAACTAA GACATCCTCT GCTACATGTG CAGCTAGAGA CACGAGCTCC
  R
  GCATAACCTC ACAAGAGACA GCTATATCAG GGTCCTGTCA GCAAAATCTT GCTGGCACAT
  GCAATAGTAT CTGGGTTTGG TGGCTGTTTA TGGGATGAAT CCCTGGGTGG GACAGTCTCT
  GGATGGTCAT TCCTTCTGTC TCAGCTCCAA ACTTTGCCTC TGTAACTTCT TCCATGGATA
  TTTTGTTCCC CATTCTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560391	MGP_WTSI_9_7356317	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254199627					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560391	MGP_WTSI_9_7356317	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7356317 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83727	transcription start site region 83727	1519 bp downstream
Tssr83728	transcription start site region 83728	1494 bp downstream
Tssr83729	transcription start site region 83729	1485 bp downstream
Tssr83730	transcription start site region 83730	1003 bp downstream
Tssr83731	transcription start site region 83731	959 bp downstream
Tssr83732	transcription start site region 83732	926 bp downstream
Tssr83733	transcription start site region 83733	878 bp downstream
Tssr83734	transcription start site region 83734	482 bp downstream
Tssr83735	transcription start site region 83735	460 bp downstream
Tssr83736	transcription start site region 83736	1484 bp upstream
Tssr83737	transcription start site region 83737	1547 bp upstream
Tssr83738	transcription start site region 83738	1895 bp upstream
Tssr88070	transcription start site region 88070	1539 bp upstream
Tssr88071	transcription start site region 88071	891 bp upstream
Tssr88072	transcription start site region 88072	1944 bp downstream