rs254202362 SNP Detail

Summary

• ID
  rs254202362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151825193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTCAAA AATATTAATC
  CAGAATTCCT CCTGGCAAAA GGAAGTGCAG GACAAAGAGT GGAGCAGAGA CTGAAGGAAA
  GGCCATCCAG GGACTGCCCC ACCTAAGGAT CCATCCCATC TGCGGACACT AAACCCAAAC
  ACTATTGCCA AGAAGAGCTT GCTGACAGAA GCCTGGTATA GCTGCCCCTG AGAAGCTCTG
  Y
  CAGAGCTGCG GATGTACACC GCCAAACATC GGGCTGAGCG TGAGGACCCC AAGAGGGAAG
  TTAGGGCAAG AACTGTAAGG AGCTGAAGGG GTTTTCAGCC CCATAGAAAG AGCAACAATA
  TCAACCAACC AGACCCCCCA AAGCTCCCAA GGAGTAAACC AACCAAAGAG TACACAGGGG
  GTACCCATGG CTCCAGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028136	CHEV_3_151782520	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254202362					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151825193 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587460	regulatory region 587460			550 bp proximal
Tssr1098	transcription start site region 1098			540 bp downstream
Tssr32394	transcription start site region 32394			754 bp upstream