rs254206278 SNP Detail

Summary

• ID
  rs254206278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:96182768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTTTAAA AGGTTAGATT
  CCCTCCAAGC CTTTGACACT TTCTCTGAAA ACCAAAATTG CTACTAAGTA CGTGTGTGGA
  TAGACACACA CTCGTAGCAT TCGCTGCCTT CCGAGTGTCA GCCTCCCCCT TGTAAAGGGC
  CGACATGTCA TCCCTCCACT CTGCTCCTGG ACCTGACAAT CAAAGCCAAG CAGGCCAGTC
  Y
  GCCTGCCTGC CTGCCCGGCG GCGCAGGAGT GGGGTGGAAG GACGCTCCGA CGTCCACCTA
  GAGACATCAA CAACGTACAG TAGTCCCAGG TTGGGCTCCG ACGACTTTAA AAGTCAGGGC
  TCGTGCCGCC TCCGTCCCCA CGGCGCCCGC GGCTGCAGGG CCCGTCCGCC GGGTCGCCTT
  GGGCCGCCAC CGCGGGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395085925	MGP_WTSI_15_96115318	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254206278					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395085925	MGP_WTSI_15_96115318	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:96182768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7599	CpG island 7599	within coordinates
Cpgi7600	CpG island 7600	1402 bp proximal
Gm38469	predicted gene, 38469	within coordinates
Gm62599	predicted gene, 62599	277 bp downstream
Rr369997	regulatory region 369997	514 bp downstream
Rr391146	regulatory region 391146	within coordinates
Rr508521	regulatory region 508521	1313 bp distal
Rr508522	regulatory region 508522	789 bp distal
Rr508523	regulatory region 508523	within coordinates
Rr508524	regulatory region 508524	690 bp proximal
Rr508525	regulatory region 508525	808 bp proximal
Rr508526	regulatory region 508526	1798 bp proximal
Tssr132814	transcription start site region 132814	1118 bp upstream
Tssr132815	transcription start site region 132815	1869 bp upstream
Tssr132816	transcription start site region 132816	1902 bp upstream
Tssr132817	transcription start site region 132817	1973 bp upstream
Tssr136021	transcription start site region 136021	604 bp downstream
Tssr136022	transcription start site region 136022	822 bp downstream
Tssr136023	transcription start site region 136023	998 bp downstream