rs254209252 SNP Detail

Summary

• ID
  rs254209252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:174572713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGAGAAA TTCTGTCATC
  ATACCCATTT GGGATTGTAA AAGTTTCTTG TGATTGGATC CCTACATTCT CCCCTAAATT
  TGGGGAATTT TCTGCTTTTG CTACTGAATA GATTCTCAAT AACAGTTCTT ACTTTTATCC
  CATTGTTGAT TTTGTCTTGA TTATGTCCCA AGGTTGTCAT CATGGTCATT GGCTTTCTTT
  Y
  TTTTTTTTTT TTTTTTCTTG ATGTTTGATG CTACATTCCT CAACCTTGCT GTTCCTTCTT
  GACATTCTCA TTCTTTCTTC TGGTAGGTTG AGTCTATTTG ATAATTCTTC ACAGTTTATT
  TTTCTTTATT TTATTTAATT CTTTCTGGTT TTTAACTATT ATTTCAAATT AAAGTTTTAC
  TATTATTTTA AATTAAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss352458434	MGP_WTSI_1_176675278	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs254209252					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352458434	MGP_WTSI_1_176675278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174572713 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	within coordinates
Gm51689	predicted gene, 51689	1114 bp downstream