rs254222883 SNP Detail

Summary

• ID
  rs254222883
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141151682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCACACA CTCTCAGGCC
  CCAGGTGGGT CACCCCTGCC CCAAACTAGG GCATCCCTCT CCATCCAACG CAGTCCAGGG
  ACCTGTCTGC TCTCACCCAG ATAGACCCTC CCTATCTAAG TTCACAATAG AGGGGCTGAG
  GTACCAACCT GGAGAGCAAG ACGAGGGCAG AGTCTAACAC AGAGTGGCGG CTTCAATGGC
  R
  TTTCTGCAGG GCAGGGGACC AGAAGCCCCT TCCTGGCAAA TGAGAGGCTG GCCACAAGCA
  GGGCTTCTGG CCTAGGTAGA CTGCCTCAGG GAAGCCAGAG AGATAGCCAT GACTGTTACC
  TTCCTTGTAA CTCTCGAAAC CTCAAACCCA GGGCTACCTG TCACCCTGAG GCTCTAACAG
  CTACATGTAC CAGACAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363520398	MGP_WTSI_4_140980286	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254222883					SNP	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363520398	MGP_WTSI_4_140980286	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141151682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	1465 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	454 bp proximal
Rr603760	regulatory region 603760	932 bp proximal
Rr603761	regulatory region 603761	1923 bp proximal
Tssr40062	transcription start site region 40062	1848 bp downstream
Tssr40063	transcription start site region 40063	362 bp downstream
Tssr40064	transcription start site region 40064	301 bp downstream
Tssr40065	transcription start site region 40065	274 bp downstream
Tssr40066	transcription start site region 40066	170 bp downstream
Tssr40067	transcription start site region 40067	116 bp downstream
Tssr40068	transcription start site region 40068	61 bp downstream
Tssr40069	transcription start site region 40069	61 bp upstream
Tssr40070	transcription start site region 40070	146 bp upstream
Tssr40071	transcription start site region 40071	170 bp upstream
Tssr40072	transcription start site region 40072	215 bp upstream
Tssr40073	transcription start site region 40073	238 bp upstream
Tssr40074	transcription start site region 40074	263 bp upstream
Tssr40075	transcription start site region 40075	276 bp upstream
Tssr40076	transcription start site region 40076	303 bp upstream
Tssr40077	transcription start site region 40077	322 bp upstream
Tssr44314	transcription start site region 44314	1732 bp upstream
Tssr44315	transcription start site region 44315	297 bp upstream
Tssr44316	transcription start site region 44316	199 bp upstream
Tssr44317	transcription start site region 44317	171 bp upstream
Tssr44318	transcription start site region 44318	187 bp downstream
Tssr44319	transcription start site region 44319	1197 bp downstream