rs254228822 SNP Detail

Summary

• ID
  rs254228822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85427218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATAATATT CTATGTCAGC
  TTCTTTCATC GCAGCAGTGA TTCTAAGTAT GTGGCTTTTT AAAAAAGACT TATTTATTTT
  ATGTGAATAC ACGGTCTCTC TCTCTTCAGA CACACCAGAA GAGGGCATCA GATCCCCATT
  ACAAATGGTT GTGAGCCACC ATGTGGTTGC TGGGACTTGA ACTCAGGACC TCTGGAAGAG
  Y
  AGTCAGTGCT CTTAACCACT GAACCACCTC TCCAGCCTTA AGTATGTGGC TTTATACAGA
  GATGAATCTC CAGTGCCTAG GACACAGTGG CTGCTCAGTA AAGGTTACTA AACAAAGAAC
  TCTGCCCAGC TCTGCTGTCC TGAACAAGAG AATGGCCAAA AAAACCACGA GAGCTTTGCT
  AGGATATTTT TTCTCAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369068624	MGP_WTSI_6_85400230	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254228822					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369068624	MGP_WTSI_6_85400230	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85427218 () rs orientation: forward

Symbol	Name	Function Class
Cct7	chaperonin containing TCP1 subunit 7	1278 bp upstream
Cpgi17646	CpG island 17646	515 bp proximal
Pradc1	protease-associated domain containing 1	within coordinates
Rr633222	regulatory region 633222	69 bp distal
Rr633223	regulatory region 633223	291 bp proximal
Rr633224	regulatory region 633224	1002 bp proximal
Rr633225	regulatory region 633225	1289 bp proximal
Rr633226	regulatory region 633226	1724 bp proximal
Rr633227	regulatory region 633227	1867 bp proximal
Tssr57418	transcription start site region 57418	1252 bp upstream
Tssr57419	transcription start site region 57419	1747 bp upstream
Tssr57420	transcription start site region 57420	1769 bp upstream
Tssr57421	transcription start site region 57421	1805 bp upstream
Tssr61752	transcription start site region 61752	985 bp downstream
Tssr61753	transcription start site region 61753	1593 bp downstream
Tssr61754	transcription start site region 61754	1627 bp downstream
Tssr61755	transcription start site region 61755	1719 bp downstream