rs254230634 SNP Detail

Summary

• ID
  rs254230634
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5712847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCAGGG GCAGGCCTCC
  ATTAGTACTT TTTTTTGCAT CATCCAGTGG CATCAAGGGG GCCAGGCTGG GAGGGGACAG
  GGAGCAGCTC CACGGTGCCC CTCAGCTGGG TCTCCAGAAC CAAACAAGAG CAGACCTCCT
  CAGGGTCTTC CTGTCTGTCT GTCTGTCTTC TAGGATAAGC TCTGATGCTG CACTTCATGA
  K
  TTCTTTGAAG ACTCCTTGGA AACTGAAAGG TGAAGCCAAC TATGTCCGTG TGTGAACTGT
  GCAGGCCCCA GGTCCATAGA CCAAGCTGTG GGCACAGACT GAGGCCGCAG TGCCGGGAGG
  AGCCCTGGGA ATGTGTGCAG CCCAGTCCAG GAGCTCCCTC TTGTTCTGGC CCTGCCTTAA
  GGGGTGTACT TGGGCTCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401660122	MGP_WTSI_19_5662819	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254230634					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401660122	MGP_WTSI_19_5662819	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5712847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10466	CpG island 10466	1886 bp distal
Cpgi10467	CpG island 10467	584 bp proximal
Pcnx3	pecanex homolog 3	1816 bp downstream
Rr543103	regulatory region 543103	775 bp distal
Rr543104	regulatory region 543104	within coordinates
Rr543105	regulatory region 543105	150 bp proximal
Rr543106	regulatory region 543106	316 bp proximal
Rr543107	regulatory region 543107	791 bp proximal
Rr543108	regulatory region 543108	861 bp proximal
Rr543109	regulatory region 543109	1100 bp proximal
Sipa1	signal-induced proliferation associated gene 1	within coordinates
Tssr157622	transcription start site region 157622	1157 bp upstream
Tssr157623	transcription start site region 157623	816 bp downstream
Tssr157624	transcription start site region 157624	855 bp downstream
Tssr157625	transcription start site region 157625	882 bp downstream