rs254240463 SNP Detail

Summary

• ID
  rs254240463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55204606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGCTTA ATATCTGTCC
  CCTGCCTCCA ACACACAAGC TCCCATCCCA GGCTCTCCCT TCCCCCTTTC AACCCTGGCT
  ATCTGCATAG CTTCAGGCTG AGGGGAGCCT CCTACTCTCT CAGACCTGAA GTTCCACAGT
  GCTGGCTCCC CAGAGACAAA GTCATGATGT CTAGGGAGGG CATCCAATTT GCAGGTGCAC
  R
  ACTCAGTTTC CCTTTGATAG TAAGAGAATT CTACGCTCCC CTCCTCTCTC TCCTTACTCT
  GTGCAGATAC TGTCTGTAGT CTCTGTTGCC CACATCTCTA GACAGGTGTC CTCCAAAGAC
  CTTGCTACCT TGGCTTAGGG ACACATATAG AGTGTCCATT CTATTTTCCA TGGTCCCTGA
  GATGCAGGCC ATCATCCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391147583	MGP_WTSI_14_55585986	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254240463					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391147583	MGP_WTSI_14_55585986	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55204606 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	1609 bp upstream
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	222 bp upstream
Rr407057	regulatory region 407057	within coordinates
Rr492378	regulatory region 492378	555 bp distal
Rr492379	regulatory region 492379	18 bp distal
Rr492380	regulatory region 492380	1086 bp proximal
Tssr4419	transcription start site region 4419	847 bp upstream
Tssr4420	transcription start site region 4420	734 bp upstream
Tssr4421	transcription start site region 4421	728 bp upstream
Tssr4422	transcription start site region 4422	676 bp upstream
Tssr4423	transcription start site region 4423	650 bp upstream
Tssr4424	transcription start site region 4424	612 bp upstream
Tssr4425	transcription start site region 4425	499 bp upstream
Tssr125718	transcription start site region 125718	1523 bp upstream
Tssr125719	transcription start site region 125719	1602 bp upstream
Tssr125720	transcription start site region 125720	1632 bp upstream
Tssr125721	transcription start site region 125721	1652 bp upstream
Tssr128732	transcription start site region 128732	1853 bp upstream
Tssr128733	transcription start site region 128733	1818 bp upstream
Tssr128734	transcription start site region 128734	1790 bp upstream
Tssr128735	transcription start site region 128735	1747 bp upstream
Tssr128736	transcription start site region 128736	1715 bp upstream
Tssr128737	transcription start site region 128737	1688 bp upstream
Tssr128738	transcription start site region 128738	1676 bp upstream
Tssr128739	transcription start site region 128739	1325 bp upstream
Tssr128740	transcription start site region 128740	1255 bp upstream
Tssr128741	transcription start site region 128741	1182 bp upstream
Tssr128742	transcription start site region 128742	564 bp upstream
Tssr128743	transcription start site region 128743	541 bp upstream
Tssr128744	transcription start site region 128744	212 bp upstream
Tssr128745	transcription start site region 128745	69 bp downstream
Tssr128746	transcription start site region 128746	803 bp downstream
Tssr128747	transcription start site region 128747	832 bp downstream
Tssr128748	transcription start site region 128748	851 bp downstream
Tssr128749	transcription start site region 128749	914 bp downstream
Tssr128750	transcription start site region 128750	933 bp downstream
Tssr128751	transcription start site region 128751	950 bp downstream
Tssr128752	transcription start site region 128752	1003 bp downstream
Tssr128753	transcription start site region 128753	1192 bp downstream
Tssr128754	transcription start site region 128754	1271 bp downstream