rs254242867 SNP Detail

Summary

• ID
  rs254242867
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61118795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGGTATC ACTTCTACTT
  GGACGCATGC CTTTTTACAG CCAAACTTCC GTGTATTTCG TAAATGGATT TTGCGTTAAC
  GGACATCTAT GTGATAACTA GACCTCTCAA GTTTACTGTA AAGAAGAGTC GGATGGGTTG
  GGAAGTGGGT GGGAAGAGGA GTGAGAGGAA GTTTTAACCC CATTCCAGAG GGTCTTTTTT
  K
  TGGGGGGTGT CCCTTCTGGG GGAGGGTGCT TTCTGAGGTG GCCTCACCCC CCAGGGAGCA
  TGGTTTCCTT CCATTATGGT CCCCAAAGTC AGCTGACAAG ATTTCTTCCA GAGCCAGCAT
  GACTAACACA CAGTGAGTCA GGTCAGGGGA GGCTATCAGG AAGGGGTTAT CTAGACTTGG
  CATCTCTGGA ACTGGAGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400872504	MGP_WTSI_18_61145377	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	G	T	T	T	T	G	G	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254242867					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	G	T	T	T	T	G	G	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400872504	MGP_WTSI_18_61145377	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61118795 () rs orientation: forward

Symbol	Name	Function Class
Camk2a	calcium/calmodulin-dependent protein kinase II alpha	within coordinates
Cpgi10101	CpG island 10101	787 bp distal
Rr538733	regulatory region 538733	1930 bp proximal
Tssr5345	transcription start site region 5345	1580 bp downstream
Tssr151376	transcription start site region 151376	1391 bp downstream
Tssr151377	transcription start site region 151377	1323 bp downstream
Tssr151378	transcription start site region 151378	1272 bp downstream
Tssr151379	transcription start site region 151379	41 bp downstream
Tssr151380	transcription start site region 151380	19 bp upstream
Tssr151381	transcription start site region 151381	53 bp upstream
Tssr151382	transcription start site region 151382	157 bp upstream
Tssr151383	transcription start site region 151383	193 bp upstream
Tssr151384	transcription start site region 151384	239 bp upstream
Tssr151385	transcription start site region 151385	279 bp upstream
Tssr151386	transcription start site region 151386	339 bp upstream
Tssr151387	transcription start site region 151387	379 bp upstream
Tssr151388	transcription start site region 151388	396 bp upstream
Tssr151389	transcription start site region 151389	1806 bp upstream