rs254243103 SNP Detail

Summary

• ID
  rs254243103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15078529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCGGGGAG CGCTCTGGCA
  GTCGACCGCA GAGCCCGTCC GGGGACGCAG AGTCGCGCGG GGACGCGGCC GTTTATTGCT
  ACCAGGCGGA GGCCGGGGAG TGGCGCGAGC TGACCCGGCT GCCCGAGGGC GCGCCAGCGC
  GCGGCTGCGG CCTCTGCGTG CTCTTCAACT ACCTCTTCCT GGCGGGCGGT GTGGCTCCTG
  Y
  GGGTCCCGAT GGCCGCGCGC GCCCGTCGGA CCAGGTGTAT TGCTACAACC CGGTCACCGA
  CTCCTGGAGT ACTGTGCGGC CGCTGCGCCA GGCACGCTCG CAGGTGCAGC TGCTGGCCCT
  GGACGGCCAC CTGTATGCCG TGGGTGGCGA GTGCCTGCTC AGCGTGGAGC GCTACGACCC
  GCGAGCTGAC CGATGGACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss373787502	MGP_WTSI_8_15028529	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs254243103					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373787502	MGP_WTSI_8_15028529	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15078529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	within coordinates
Gm37844	predicted gene, 37844	107 bp upstream
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660169	regulatory region 660169	1104 bp distal
Rr660170	regulatory region 660170	333 bp distal
Rr660171	regulatory region 660171	1987 bp proximal
Tssr76486	transcription start site region 76486	1353 bp downstream
Tssr76487	transcription start site region 76487	1323 bp downstream
Tssr76488	transcription start site region 76488	1180 bp downstream
Tssr76489	transcription start site region 76489	1142 bp downstream
Tssr76490	transcription start site region 76490	752 bp downstream
Tssr76491	transcription start site region 76491	546 bp downstream
Tssr76492	transcription start site region 76492	225 bp upstream
Tssr80488	transcription start site region 80488	866 bp upstream