rs254248672 SNP Detail

Summary

• ID
  rs254248672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:70092275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGAGGG AGGGACAGAG
  AGGGGGGGGG AGGGACAGGG AGAGGGAGAG GGAGAGGGAG AGGGAGAGGG AGAGGGAGAG
  GGAGAGGGAG AGGGAGAGGG AGAGGGAGAG GGAGAGGGAG AGGGAGAGGG AGAGGGAGAG
  GGAGAGGGAG AGAGAGAGAG ACTCCAGCCT GAGCAGGTAA AGAGCACGCA CTGGTCCACC
  R
  TCCACCGGGC AGTTTACAAG GAACTCACAG CTCTGCAAAA GCCACAGGTG ATGGTCCTGT
  GATCAACTCC ACCATAGCAG CTAGTCCAGC CTAGCTCTAG CATGGTCTTC CCTAGCCCTG
  GACCCAGAGA AAGCAAGAGT CAATAGAGAC TGTGACCAGC GCTTCTGAGT TCCGGGATAA
  TCTTACTGGC AGCCAGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403736565	MGP_WTSI_X_68301844	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs254248672					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403736565	MGP_WTSI_X_68301844	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:70092275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22753	CpG island 22753	1079 bp proximal
Gm61915	predicted gene, 61915	within coordinates
Gm61918	predicted gene, 61918	within coordinates
Mamld1	mastermind-like domain containing 1	1571 bp upstream
Rr691735	regulatory region 691735	717 bp proximal
Rr691736	regulatory region 691736	1295 bp proximal
Rr691737	regulatory region 691737	1413 bp proximal
Tssr161155	transcription start site region 161155	1396 bp upstream
Tssr161156	transcription start site region 161156	1457 bp upstream
Tssr161157	transcription start site region 161157	1491 bp upstream