rs254256334 SNP Detail

Summary

• ID
  rs254256334
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121138251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTAATGC TCAGCTAAGC
  ATTGAGATGC TGACATTTAA TCTCCGTGGA CTGGAATGCT CTGATTTCAC TGTTTTCAGC
  CAGTAAATGT CACTCCCAAT GCTGCTGCTT GCACTCACAC TTAAGCGCTT TCATCTGCAC
  TGGGTGCAGT GTGTCAGAGA ATTCTTTGTG CAACACTTGG TGGTGGGGGT GGGCAGGAGT
  W
  GGGGAGGTGG GGGGGGGGGA GTGGCAGTCA GCTAAGCCTA ATCTTTAAAC AGGGCAAAAA
  AACTGCCTGA AAGGCAGAGA CAACTCTGTT TTCATAAGAT GTTTGTGATA CTCAGTCCTG
  AGTTCTACCC AGTACTCTTT CAAAGGCACG GCAGTAGCTC AGTAAGCCTG GGTCCTGCTG
  GACTCACAGA TGGTTGCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320903104	CHEV_3_121047520	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254256334					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121138251 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	within coordinates
Gm33310	predicted gene, 33310	351 bp upstream
Gm66111	predicted gene, 66111	1240 bp upstream
Rr367544	regulatory region 367544	418 bp upstream
Tssr35413	transcription start site region 35413	1265 bp upstream
Tssr35414	transcription start site region 35414	1231 bp upstream