rs254257115 SNP Detail

Summary

• ID
  rs254257115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69489409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATTAAAGT TAGGGCCCAT TGGACACGCA AACTTTATAT
  GCCCCAGTAC AGGGGAACGC CAGGGCCAAA AAGGGGGAGT GGGTGGGTAG GGGAGTGGGG
  R
  TGGGTGGGTA TGGGGGACTT TTGGTATAGC ATTGGAAATG TAAATGAGCT AAATACCTAA
  TAAAAAATGG GAAAAAAAAT TAAAGTTAGG CCAGGACTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323730626	CHEV_11_69412085	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254257115					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69489409 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	1153 bp downstream
Gm72066	predicted gene, 72066	1146 bp upstream
Rr386229	regulatory region 386229	824 bp upstream
Rr450033	regulatory region 450033	965 bp proximal
Rr450034	regulatory region 450034	1006 bp proximal
Rr450035	regulatory region 450035	1458 bp proximal
Tssr102487	transcription start site region 102487	1430 bp upstream
Tssr108712	transcription start site region 108712	1424 bp downstream
Tssr108713	transcription start site region 108713	1569 bp downstream
Tssr108714	transcription start site region 108714	1651 bp downstream
Tssr108715	transcription start site region 108715	1664 bp downstream
Tssr108716	transcription start site region 108716	1976 bp downstream