rs254258181 SNP Detail

Summary

• ID
  rs254258181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134973458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTAGGGA AGAGGCCACA
  GCCCGGACCT GTAAGACCAG CAAGGCTTCA AGAGTGGGAA AAGGACATTC CTTAGAGAAG
  GTGACTGCTA TAACGTGGCC TGTGGAAGAT AAGCAGGCCA GCCTGTTTGC TCAGAGAAAG
  GAAGGCCAGA AAGGAAGAGG CAGGGGAATT AGCCCTTGTT GTTCCTGTCA TCTGTTGTCC
  Y
  TCCCAGAGTC CCCCAGCCCC ACCCCACCCC ACCCCCACCC CCAGTCCTGG GCATACACTG
  GGCCCTAGAT ACAGGGTTTC CCCTCTAACA AATGAAGAGA TTGTCATCAT GGTAATCTCA
  TCAAAACTGA GGCAGGAGAA TTGCATTGAG TTTGATGTTA GTCTGGGCTT TATACTGTAT
  CTAAAAAAAA AAAAGCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366823219	MGP_WTSI_5_135420474	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254258181					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366823219	MGP_WTSI_5_135420474	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134973458 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	519 bp downstream
Cpgi16731	CpG island 16731	1481 bp proximal
Mettl27	methyltransferase like 27	1967 bp downstream
Rr124500	regulatory region 124500	within coordinates
Tssr49107	transcription start site region 49107	522 bp upstream
Tssr49108	transcription start site region 49108	664 bp upstream
Tssr49109	transcription start site region 49109	1515 bp upstream
Tssr53699	transcription start site region 53699	647 bp downstream
Tssr53700	transcription start site region 53700	1212 bp downstream
Tssr53701	transcription start site region 53701	1417 bp downstream
Tssr53702	transcription start site region 53702	1651 bp downstream
Tssr53703	transcription start site region 53703	1835 bp downstream