rs254267185 SNP Detail

Summary

• ID
  rs254267185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:73348158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAATGCT CACTCCCCAA
  GCTTTATGGA GCTTCCAGCA ACAGCCATGA ACTTGAGGTT CCTTGAATTT GCGAGGTGTG
  GAAAGACTAC TTGACTGTCT GTCCAGCTTA GCTGTTATGT TTTTTGGGGG GGAGGGGTGA
  TGTGTTAAGA GTGAGTGGTA CACTGGGGTT TATTTCTGTG GCCTGGGAAG GAAGAAACCA
  Y
  CACGAGGATT GGTGAACAAA GTGTGCTCAC TGGGTTTCTG GATTATTCCC ATAAAGACTG
  CCTGTCAAGA GGCCGGAGGT GTGTGTGGGG GGTTGCTCTG TTGTTTCCTT CCTAATAAAA
  TAAAGACGTG TTGCCTTGTG TTGGGCTTCG TGTCACTCAT TTCTGCACTG AACAGTAGAT
  TTTTTTTTCT TGACTGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	SPRET/EiJ
ss403782919	MGP_WTSI_X_71549891	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	JF1/MsJ	SPRET/EiJ
rs254267185					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403782919	MGP_WTSI_X_71549891	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73348158 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6ap1	ATPase, H+ transporting, lysosomal accessory protein 1			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi22795	CpG island 22795			369 bp proximal
Gdi1	GDP dissociation inhibitor 1			460 bp upstream
Rr692006	regulatory region 692006			within coordinates
Rr692007	regulatory region 692007			457 bp proximal
Tssr161327	transcription start site region 161327			719 bp downstream
Tssr161328	transcription start site region 161328			664 bp downstream
Tssr161329	transcription start site region 161329			568 bp downstream
Tssr161330	transcription start site region 161330			516 bp downstream
Tssr161331	transcription start site region 161331			381 bp downstream
Tssr161332	transcription start site region 161332			361 bp downstream
Tssr161333	transcription start site region 161333			440 bp upstream
Tssr161334	transcription start site region 161334			540 bp upstream
Tssr161335	transcription start site region 161335			687 bp upstream
Tssr163632	transcription start site region 163632			135 bp downstream