rs254269171 SNP Detail

Summary

• ID
  rs254269171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:56094633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGAGATA ATATGATCCC
  TGGCGCTTGC TGGCTGCCAG CCCAGATAGA AAAACAAAAA CAAAAACAAA AACAAAGAAA
  CCAGAAGCTC TGGGTTCAGT AAGAGACAAT AACTCAAAAG GAATAAGAAA AAGTGATTTA
  AAAAAGATAT ATGGTACCTT CTCTGGCCTT CAAGGACATG CATGTGCACA CACACACACA
  Y
  AGACAAAAGA ATATAATATA TATATGTATA CATATGTACA TATATATATT ATTTAAGTGT
  TTATAAATAA GATAGGGAAC TTTTGCACAG AAGGCCCTCT TCAGGCCTTT TATCTTCTAT
  ACACATACAT ATATACATAT ATACTTTTTT TTACTTATTG ATTTATATAT ATAAAGTAAA
  CAAGTAATTA GAACCCTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss403521723	MGP_WTSI_X_54302450	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T	C	T	T	C	C	T	T	T	T	T	C	C	T	T	T	T	T	C	T	C	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs254269171					SNP	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T	C	T	T	C	C	T	T	T	T	T	C	C	T	T	T	T	T	C	T	C	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403521723	MGP_WTSI_X_54302450	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:56094633 () rs orientation: forward

Symbol	Name	Function Class
Brs3	bombesin-like receptor 3	515 bp downstream
Rr4330	regulatory region 4330	1033 bp distal