rs254269195 SNP Detail

Summary

• ID
  rs254269195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7554256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCCTTG GTGACAAAGG
  TAAACATACA GACTTTATAG CCCTCCAACA AGGCTTAAGG GGAGAGAGGC ACAATTATTC
  TCTTGCAACT CCCTCTACCT TCTGTGTGTG ACTGCGAAGA AGCTTCAGAG GAACGAAAGA
  GGTCCTCAGA TGGCTGGTGG GTACGTTCCA CATGCTGTTC TACATGCTAC AGCGTCCTTG
  R
  ATGGCTGGTG GGTAAGTTCT ACATGCTACA GCGTCCTCAG ATGGCTGGTG GGTAAGTTCT
  ACATGCTACA GCGTCCTCGG ATGGCTGGTG GGTACGTTCC ACATGCTGTT CTACATGCTA
  CAGCAGGCTT CAATTCTTCT TTCTCCTAAA TGTAAAGCAA GTCTGCTTTC CTCCTCTAGA
  ACACAAGACT GAAACCCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss367299439	MGP_WTSI_6_7504256	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs254269195					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367299439	MGP_WTSI_6_7504256	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7554256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	539 bp proximal
Rr146475	regulatory region 146475	544 bp proximal
Tac1	tachykinin 1	805 bp upstream
Tssr54885	transcription start site region 54885	797 bp upstream