rs254269649 SNP Detail

Summary

• ID
  rs254269649
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45212143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGCCGCC GCCCCCGGGC
  CCCGGGACGC GCAAGGTAAG GAGCCAGAGC GCGCGATCGC GCGGGAAAGT TGGGCACGGA
  GCGGCCGAGC AACTTGCGAT GCGCCCGCGT CCCGCGTCGT CCTTGCAGCC GCCCTTCGCC
  TGCCCGCGCC CCGGTCCCTC GGCGGGACAG CGGGGGGCCG CGGAGCTGTG GACGCTGACA
  S
  TGCTGTGAGA GCAGGGCGAG CGGGTCCCGG GTGGGGGAGC AGTGGGAGCC ACGGGTCCTC
  GCCACCCGCC CGCGTCCTAG AGAAACGGGT GGCTGCCAGA CGGATCCCAC AAAACCGTCG
  CCCCGAGCCG CCCGGAGGTG CGCGGAGAGT CCGGGAAAAT ATCAGTGAAT TGCGCGTCTC
  CTCAAAAGGT TTTTGCTCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss380236865	MGP_WTSI_10_45055853	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs254269649					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380236865	MGP_WTSI_10_45055853	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45212143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1517	CpG island 1517	within coordinates
Popdc1	popeye domain cAMP effector 1	within coordinates
Rr431084	regulatory region 431084	265 bp distal
Rr431085	regulatory region 431085	352 bp distal
Rr431086	regulatory region 431086	within coordinates
Tssr93188	transcription start site region 93188	303 bp downstream
Tssr93189	transcription start site region 93189	258 bp downstream
Tssr93190	transcription start site region 93190	150 bp downstream
Tssr93191	transcription start site region 93191	120 bp downstream
Tssr93192	transcription start site region 93192	257 bp upstream