rs254271052 SNP Detail

Summary

• ID
  rs254271052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94392895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTACCAGC AAAGGTAGCC
  CTCTGCCTTA TCCCTTCACT GCAGGACCCA GTAGGGTGCC TTCATGGTAG GCACTTACCG
  CTCTTCTCCA CCCCATCCAC TTACTCTAGG CTGTGCCTTT GTGAAGTTCC AGACTCACGC
  TGAGGCCCAG GCAGCCATCA ACACCCTTCA CAGCAGCCGG ACCCTACCGG TGAGCCCCAG
  Y
  CCCCTCCTTC CTTGTCTCTC TCTCCCACTG GCACACTTGC CAGGCCCTGG CACAGAGCAC
  ACTTCCATTC AGGATAGGAC TTGTAATGAA CTTTCCCAAA AGAATCAACG AATCAAATAC
  CACACTCCCA TAGCTGCTGC TCTTCTCTAG TCCAATTCCC TTCCGCTCCT CTCCAGCCTC
  CCCTCTTAGC TCCTATCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358885747	MGP_WTSI_3_94289510	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254271052					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358885747	MGP_WTSI_3_94289510	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94392895 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	1222 bp distal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	65 bp distal
Gm65215	predicted gene, 65215	1369 bp upstream
Gm65218	predicted gene, 65218	616 bp upstream
Rr580639	regulatory region 580639	1380 bp distal
Rr580640	regulatory region 580640	879 bp distal
Rr580641	regulatory region 580641	126 bp distal
Tssr30454	transcription start site region 30454	1253 bp downstream
Tssr30455	transcription start site region 30455	1237 bp downstream
Tssr30456	transcription start site region 30456	1180 bp downstream
Tssr30457	transcription start site region 30457	716 bp upstream
Tssr30458	transcription start site region 30458	744 bp upstream
Tssr34391	transcription start site region 34391	1360 bp upstream