rs254274903 SNP Detail

Summary

• ID
  rs254274903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85426541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCTTCA TTTTTTTTGT
  ATTTTTAATT TAAATTTTAT GTATATGTGT GCTTTGGCTG CATATATGTT CATGCACCAT
  GTGTGTGCCT GGTGCTAGCC GAGTCTGTAA GAGGGTATCA GCTCCCCAGA AATGGAGGGA
  CAGACAGTGG TGAGCTGGGA CCTATGGAAG AACAACTAGT ATTCCTTTTT TTTTTTTTTT
  Y
  CTCGAGACAG GGTCTCTCTG TATAGCCCTG GCTGTCCTGG AACTCACTTT GTAGACCAAG
  TTGGCCTCGA ACTCAAAAGA TCCGCCTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGCG
  TGCACCACCA CTGCCGGGCA CAACTAGTAT TCCTAACTGC CAAGCTGTCT GTCCAGCTCT
  CTGCCTCTGT CCACCTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369068607	MGP_WTSI_6_85399553	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254274903					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369068607	MGP_WTSI_6_85399553	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85426541 () rs orientation: forward

Symbol	Name	Function Class
Cct7	chaperonin containing TCP1 subunit 7	1955 bp upstream
Cpgi17646	CpG island 17646	1192 bp proximal
Pradc1	protease-associated domain containing 1	within coordinates
Rr633222	regulatory region 633222	587 bp proximal
Rr633223	regulatory region 633223	968 bp proximal
Rr633224	regulatory region 633224	1679 bp proximal
Rr633225	regulatory region 633225	1966 bp proximal
Tssr57418	transcription start site region 57418	1929 bp upstream
Tssr61752	transcription start site region 61752	1662 bp downstream