rs254283287 SNP Detail

Summary

• ID
  rs254283287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121420759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCTGGAG GGTGTGAGTC
  AGATCCCCGG GAGCTGGAAT TATGTTGTGA CCCATTTGCT GTGGGTGCTG GGAGTTCAAG
  CCCACCCTCT GTGCGAGTAG CAAGTGTTCC CAACCACTTC CATCCCCCAT GTTTGGCTTT
  TATTTCATAT ATTCAATTTA ATTTAAATCC CAGAGCTGTA AGAAACATCC GTTTATTGTC
  Y
  AGTACTGTCT CTGACAATCA AAATAATATT GACTATTTCC TCCAATTGCT TGAAAAGATT
  AATCCTGATT TACAAAAAAA TATTTTTTGA CCCAGGGTCT CTTCACAAGC CCAAGTTGGA
  CTCGAACCTG CAATTTTCCT GCCTTTGCCT CTCACATGCT GGGAGACAAA TGAAAGAACT
  TAGGGAAGCG CAGAAAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382025170	MGP_WTSI_10_121021910	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254283287					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382025170	MGP_WTSI_10_121021910	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121420759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	1393 bp proximal
Rr402304	regulatory region 402304	1018 bp upstream
Rr402305	regulatory region 402305	1872 bp upstream
Rr440247	regulatory region 440247	402 bp proximal
Rr440248	regulatory region 440248	1923 bp proximal
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	1363 bp upstream
Tssr96044	transcription start site region 96044	1399 bp upstream
Tssr99623	transcription start site region 99623	1019 bp downstream
Tssr99624	transcription start site region 99624	1047 bp downstream
Tssr99625	transcription start site region 99625	1068 bp downstream
Tssr99626	transcription start site region 99626	1856 bp downstream
Tssr99627	transcription start site region 99627	1876 bp downstream
Tssr99628	transcription start site region 99628	1959 bp downstream
Tssr99629	transcription start site region 99629	1987 bp downstream