rs254285095 SNP Detail

Summary

• ID
  rs254285095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93319405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGCATAAG GCCTGGCAAG
  CCAAGGACGC CCCCCCGCAT TCACCTGCTT TGGCAGTAGT AGCGTACCTC TGTCATCTGT
  GTCCTGTTTG ATTCGTTGTT TCAGCCTTTC CCCCAAATAT CAGTAACTTA GCTCATTTTA
  CTGAATGTTG TCAGGTGGTG GAAAACCATA GCACAAGTGG ATGGCATCAG CAAGCGCGCG
  Y
  GTGGCTGGAC TTTGTTTCTC GAAAGTCGAT TTGCCTTGTA TGCCTGTTCC AAGTGGCGGC
  AGGAAGCATG TCTGTCCCTT GTATGTCGCT TTGGACCGAG GAAAGTGGGG TAAAATAACT
  ACCTGTACGT CTGGCGGGGA AACTCACCGC CTCAGCAGCT CAGCTAAAAC CCTGAGTAGC
  CATGACAACT TGCATTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365902316	MGP_WTSI_5_93600572	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254285095					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365902316	MGP_WTSI_5_93600572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93319405 () rs orientation: forward

Symbol	Name	Function Class
Rr114906	regulatory region 114906	805 bp distal
Rr130579	regulatory region 130579	596 bp proximal
Septin11	septin 11	within coordinates
Tssr47365	transcription start site region 47365	1580 bp downstream
Tssr47366	transcription start site region 47366	160 bp downstream
Tssr47367	transcription start site region 47367	926 bp upstream
Tssr47368	transcription start site region 47368	1218 bp upstream
Tssr47369	transcription start site region 47369	1246 bp upstream
Tssr47370	transcription start site region 47370	1389 bp upstream
Tssr47371	transcription start site region 47371	1448 bp upstream
Tssr47372	transcription start site region 47372	1481 bp upstream
Tssr47373	transcription start site region 47373	1516 bp upstream