rs254287927 SNP Detail

Summary

• ID
  rs254287927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:61298905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTGTCG TGGTTGACGG
  TGAAAAAAAA CCTAACTTGA CCCCGACGTG ACTTGAACAC GCAACCTTCT GATCTGGAGT
  CAGACGCGCT ACCATTGCGC CACGAGGTCA CAGCAAGCTT GCGACTCTGT GTCGCTAAAG
  GCCTCGCTTC ACCGGCTCGC TCCTGGGCTC TGAGGTTCGG AACAGAGCGC TGTCGCTCGT
  Y
  TGAGCAGAAG AGGAGTTCGG AATGCCGCAG CTCCGACAGG AACGGCGTCC GGGAGGATGC
  CAAGCTGACA TTCGGCGACA GACATTTGGC TCTTCCTCCT CCGTCTCTCG CGGTGACCCT
  CGGAGCACAC AGTGCTGGGT GAACACTCAC GGGAGAGGGG ACGCCGGAGG GGAACTGAGG
  GATGCTTGTG AACCGGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323701683	CHEV_11_61221581	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254287927					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:61298905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3009	CpG island 3009	within coordinates
Gm45605	predicted gene 45605	within coordinates
n-TWcca5	nuclear encoded tRNA trytophan 5 (anticodon CCA)	92 bp upstream
Rr402622	regulatory region 402622	within coordinates
Rr448632	regulatory region 448632	51 bp distal
Rr448633	regulatory region 448633	124 bp distal
Rr448634	regulatory region 448634	within coordinates
Rr448635	regulatory region 448635	1212 bp proximal
Rr448636	regulatory region 448636	1734 bp proximal