rs254293179 SNP Detail

Summary

• ID
  rs254293179
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7280785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCCAAGA TATAAGGTAG
  AAGAAGGAAG GAGAAGGGAG GGAGGCAGGG GGAGAACCAG GATAGGGGGA CAGACTGACG
  CAGAGACCCG AGCTGCGCGG GCCATGGCAG AGGCCAGGCA GGCCGGGATG GAAGCAAACA
  GGGAAGCTTG GAGAGAGACA GACAGACAGA CCCAGGGGCG ACGAGGCACA CAGGGAAGCC
  D
  GGACGGGGCC TCGCGGTCGG AAGCGGACTC GGGCTTGGTC CCCGGGGAGA AGGAACGAGG
  GAGAAGGAGG GAGAAGGAAG GAGAAGGAAG GAGAAGGAAG GAGAAGGGAG AACCGGGGGC
  TGCGGGACTC GTGGAAGCCG GGATGGGTCC CTCGATGGCG GACGCCGACG CCAGGCAGCC
  CCGGGTGGAA GGGAGGAGGA                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	SEA/GnJ	ZALENDE/EiJ
ss370610650	MGP_WTSI_7_7230497	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	SEA/GnJ	ZALENDE/EiJ
rs254293179					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370610650	MGP_WTSI_7_7230497	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7280785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	within coordinates
Gm45844	predicted gene 45844	within coordinates
Rr642334	regulatory region 642334	within coordinates
Rr642335	regulatory region 642335	401 bp proximal
Rr642336	regulatory region 642336	454 bp proximal
Rr642337	regulatory region 642337	715 bp proximal
Tssr64464	transcription start site region 64464	203 bp upstream
Tssr70610	transcription start site region 70610	243 bp downstream
Tssr70611	transcription start site region 70611	284 bp downstream