rs254294287 SNP Detail

Summary

• ID
  rs254294287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:75150103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGTATGGT GTGTGAGCAG GAGTTTGTGT
  GTGCGATTTC AGGCTAgtgc atggtatggt gtgtagaggt cagagaattg ccttggatgg
  ctttgccttc catctttgtt tgagacccag tctcttgttt gctattgtgt gttccatgtt
  R
  gcttgtgaaa gtgcttccag ggattctata gcttcatccc cagccccaca tcaccctaca
  aggactgtgc ttacagacat gtgctacaac acatagcttt tctccagttc tgggattcca
  gctcggatct tcacacatac tagcactttg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325690718	CHEV_18_75176686	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254294287					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:75150103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10229	CpG island 10229	1506 bp proximal
Dym	dymeclin	1749 bp upstream
Rr405742	regulatory region 405742	1422 bp upstream
Rr540715	regulatory region 540715	1259 bp proximal
Rr540716	regulatory region 540716	1775 bp proximal
Tssr151951	transcription start site region 151951	1659 bp upstream
Tssr151952	transcription start site region 151952	1677 bp upstream
Tssr151953	transcription start site region 151953	1891 bp upstream