rs254297352 SNP Detail

Summary

• ID
  rs254297352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88240491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGGCGT ATGCTCCGTA
  CAGCAGACAG GGGAAGAAGA TGAGGGCCGC CACCACCGAG GCGACAGCTC TCAGTGCCTC
  ACGACCTCCA CAGCTTCCAC AGCCCCCGCA GGACCGGCCA GGGGGTCTCA CCACGGCCTC
  AGCCCACTTG CGCTCTGGGG GCTCAGGGTG GCTGAGTCGA GCTGGCAGGA AATTCCTGAG
  Y
  TCGCCTGGTC CAGCGTCGCG ATGCAGGATG CGCTCCTCCT GTGGCTTCCG CTCGATGCAC
  TGTAGATCAA TGGGCACGAA GGCCCTAACT GTCTTCTCGG GGAGCAGGTT GGCATCCTCT
  TTGAATGGCT CCTCCGACTT AGTAGGTGCC TCTGACTCTA GGGGCTCTGG TTCAATATCT
  CGCCAGCCCG GGGGATCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358793914	MGP_WTSI_3_88137106	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254297352					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358793914	MGP_WTSI_3_88137106	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88240491 () rs orientation: forward

Symbol	Name	Function Class
BC038331	cDNA sequence BC038331	1555 bp downstream
Cpgi13370	CpG island 13370	within coordinates
D3Mit175	DNA segment, Chr 3, Massachusetts Institute of Technology 175	1682 bp proximal
Gm65350	predicted gene, 65350	467 bp upstream
Rr579714	regulatory region 579714	1918 bp distal
Rr579715	regulatory region 579715	1604 bp distal
Rr579716	regulatory region 579716	1480 bp distal
Rr579717	regulatory region 579717	301 bp proximal
Rr579718	regulatory region 579718	478 bp proximal
Rr579719	regulatory region 579719	1074 bp proximal
Tmem79	transmembrane protein 79	within coordinates
Tssr34001	transcription start site region 34001	1244 bp downstream
Tssr34002	transcription start site region 34002	1298 bp downstream