rs254300727 SNP Detail

Summary

• ID
  rs254300727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54627288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTGTATCC AGACTGATGT ATACAAAAAT
  TTCACATATT TTTTTTGAAG AGGCCAGGTG GGGACttttg agacagggtc tgtctttgta
  gttttggctg ttttagaact catatcaggc tggcctGata tatatatata tatatatata
  Y
  acacacacac acatacatat acacacacat acacacacat atacatatac acacacatac
  atatatatat atatatatat atatatatat atatatatat atatacacac acatatatac
  acacacatac acacacacat atatataCCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772419	CHEV_3_54523789	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254300727					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54627288 () rs orientation: forward

Symbol	Name	Function Class
Rr72352	regulatory region 72352	1488 bp distal
Rr83073	regulatory region 83073	592 bp distal
Supt20	SPT20 SAGA complex component	within coordinates