rs254303656 SNP Detail

Summary

• ID
  rs254303656
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84445232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGAGTC AACATAGAAA
  TGGCTGAATA TCATTGGATA AAGTCATGGA GAATGAACAA GAGGGCTAGA AGTGGGTCCT
  AGTATGTTAG CATCCTACCT CAGGAAGATG GAACTATTTT TGCAGGCTAG GGAAGATGAG
  AGACAGGCCT GGCTGGTGTG TGCCTTGTAC TTGGTGTATA AGGGATTAAT AAAGTGTGTG
  K
  GGGGGGGGGG GTGAGCTCGT CTCCTGAGAA TTCCATTTAG CATCTTAACT GGCTGGCTTG
  CTGGCCTGGC CCAATGGGAA TCCTCTTCAT AAAAGCTCTT AATGATTCCC CTGTGTAGAC
  CACAAAAGGT AGGGGAGGCT AGGCTAGGCT GGGCTGGGCT GGGCTGGGCT GGTAGGGGAA
  ATGCTGCTTG CTTCTTGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	SWR/J
ss375384092	MGP_WTSI_8_86242502	EVA_MGPV3	EVA_MGPV3	f	SNP	G	T	T	T	T	T	T	T	T	G	T	T	G	G	T	T	T	T	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	SWR/J
rs254303656					SNP	G	T	T	T	T	T	T	T	T	G	T	T	G	G	T	T	T	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375384092	MGP_WTSI_8_86242502	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84445232 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddx39a	DEAD box helicase 39a			Intron
				Noncoding-Transcript-Variant
Rr666294	regulatory region 666294			1482 bp distal