rs254312936 SNP Detail

Summary

• ID
  rs254312936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:83572647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTTATTTC TCTGAGACAA GAGCAAGAAT
  TTGTgccggg tgtggtagcg cacaccttta atcccagcac ttgggaggca gaggctggcg
  gatttctgag ttcaaggcca gctggtctac aaagtaagtt ccaggacagc cagggctata
  Y
  agagaaaccc tgtctcgaaa aaccagaaAA AAAAACCACA TGAGTATTTG TGGAAAAGAT
  GCAGAACAAG TTATTCCTGC CTGGTCACGT CTCTTCTCTA GGACAGAGGA TTACACTGTC
  AGTGGTGGGA GGGGACGTTG GGAAAGTGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324113673	CHEV_12_84866823	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254312936					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:83572647 () rs orientation: forward

Symbol	Name	Function Class
Dcaf4	DDB1 and CUL4 associated factor 4	within coordinates
Rr257993	regulatory region 257993	1247 bp distal
Rr261746	regulatory region 261746	1354 bp proximal
Rr265648	regulatory region 265648	153 bp proximal
Rr268609	regulatory region 268609	1955 bp proximal
Rr387528	regulatory region 387528	1052 bp upstream
Tssr114259	transcription start site region 114259	170 bp upstream