About   Help   FAQ
rs254316110 SNP Detail
Summary
  • ID
    rs254316110
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr5:98179852 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTGGTCCAC GTGGGGACCA
    TTCAATGGAG TAGGTTTAGC CTTCAAAGAA CCACACCCTT AAAGAAAACC ATAGCCCCAC
    TCGGAAGCCT TCTACTGTGC ATAGCTCCAG GGTGACCGGT GGGATTTCAT TAAAAAAAAA
    AAAAAAAAAA AAAAGTTTCC CACTCCATGC TAGCAGGTTG ACTGGCTTGA TCTTCTGAGG
    R
    TATTGTGCGA CAACCTCAGC GGCTGTGTGT TCATGCATGC AGCAATCCCG TCATGCCCAG
    AGGCCAGCGC TGAGCTGTAG TGCCCCTGAC CTAGAGTTCT GTGAATCTTT TCACTCACCT
    TACTCCCACC CTTTGTGGAT TGTCCTGGAA CGTTAAGGAG GGCTTGTGAT TTGTATGTCC
    CATTTGTGGC TGGGCAATCC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss365959494 MGP_WTSI_5_98461012 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254316110 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss365959494 MGP_WTSI_5_98461012 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:98179852 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Antxr2 anthrax toxin receptor 2 976 bp upstream
Cpgi16083 CpG island 16083 433 bp distal
Gm42759 predicted gene 42759 356 bp downstream
Rr615103 regulatory region 615103 460 bp distal
Rr615104 regulatory region 615104 934 bp proximal
Tssr1554 transcription start site region 1554 1031 bp upstream
Tssr47433 transcription start site region 47433 1269 bp downstream
Tssr47434 transcription start site region 47434 1257 bp downstream
Tssr47435 transcription start site region 47435 883 bp downstream
Tssr47436 transcription start site region 47436 704 bp downstream
Tssr47437 transcription start site region 47437 683 bp downstream
Tssr47438 transcription start site region 47438 1307 bp upstream
Tssr51988 transcription start site region 51988 1377 bp upstream
Tssr51989 transcription start site region 51989 1366 bp upstream
Tssr51990 transcription start site region 51990 1346 bp upstream
Tssr51991 transcription start site region 51991 1228 bp upstream
Tssr51992 transcription start site region 51992 1173 bp upstream
Tssr51993 transcription start site region 51993 1001 bp upstream
Tssr51994 transcription start site region 51994 955 bp upstream
Tssr51995 transcription start site region 51995 739 bp upstream
Tssr51996 transcription start site region 51996 677 bp upstream
Tssr51997 transcription start site region 51997 646 bp upstream
Tssr51998 transcription start site region 51998 605 bp upstream
Tssr51999 transcription start site region 51999 572 bp upstream
Tssr52000 transcription start site region 52000 544 bp upstream
Tssr52001 transcription start site region 52001 530 bp upstream
Tssr52002 transcription start site region 52002 506 bp upstream
Tssr52003 transcription start site region 52003 470 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory