rs254331447 SNP Detail

Summary

• ID
  rs254331447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112639124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGCCAGC TCACCTCGCA
  AAGATCCCCC CGCCCCCCAA TTGCTTCTCT TCCAGAGGGA CACCTAGGTA TCCTTCAAAT
  ATCCCCAAGT CTGGACATTC TGGGAAAGTG CACCTGAACA GCCCTTGACC AGCAAGCCTG
  TGTTGTCCCT CCACCTGGAG TTCATGTGGA CAATCCCCAG GAAAAGACTG GAAGGCCGCC
  R
  TGGAATAGAT CCCAACTAGG GTCTACTACA GCTGACTGGC AACCCCCTAT GTCATCTCTC
  TAGCCCAGAA GACACAAGCT GGCACCCAGA GTCTCTGTCA CTTTGCCTTG TATGAAGCTA
  AATGTGGAAC AAAAGGGAGG CCGGCTGCTA TGTGTCAAAT GCCAAATGCC AAAGTAGGAA
  AGACCACACC TGGCCCAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387390182	MGP_WTSI_12_113910901	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254331447					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387390182	MGP_WTSI_12_113910901	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112639124 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	within coordinates
Cpgi5173	CpG island 5173	572 bp proximal
Gm30150	predicted gene, 30150	1798 bp upstream
Tssr115391	transcription start site region 115391	1722 bp upstream
Tssr117874	transcription start site region 117874	1492 bp upstream
Tssr117875	transcription start site region 117875	1113 bp upstream
Tssr117876	transcription start site region 117876	646 bp upstream
Tssr117877	transcription start site region 117877	1326 bp downstream
Tssr117878	transcription start site region 117878	1385 bp downstream
Tssr117879	transcription start site region 117879	1503 bp downstream
Tssr117880	transcription start site region 117880	1653 bp downstream
Tssr117881	transcription start site region 117881	1684 bp downstream