rs254340995 SNP Detail

Summary

• ID
  rs254340995
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106768199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTCCTCA GAGGTAGATA
  CCCACTACTT TCTCTCTCAG CTCCCACCCA CCAACTCTCC TAGCTTATTT CCTTCATGGC
  ATCTGGCATC ACTGCCTTGC AGTTGCCTGT CATTTTCTCT CCTGGTCTTA CCAATATTCA
  GCTTATAGCA ATGTTTAATA AATAGAGGAT AAAAACACTT AAACCTCACA TTAGTATATA
  Y
  ACAAGTCCCA TCACAAAGTG GACAGTGCCC AAGAGCCAGG GACAGGCTGG GTGGGTCACC
  AGCTACTTAC CAACCGATTC TCTTTGCCTC TTGCTTCACG GCAAAACTTT ATAAGTTCTT
  CTTCAATAGT GGCTGGTGAA AATGTGACAT CTCTGTCTTT GAGGTCCTGG TAAAATCGTC
  CCAGATAAGA AATACAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378838654	MGP_WTSI_9_106793331	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254340995					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378838654	MGP_WTSI_9_106793331	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106768199 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	511 bp upstream
Cpgi22278	CpG island 22278	364 bp proximal
Dock3	dedicator of cyto-kinesis 3	1825 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	within coordinates
Rr368849	regulatory region 368849	900 bp upstream
Rr686409	regulatory region 686409	227 bp proximal
Rr686410	regulatory region 686410	405 bp proximal
Rr686411	regulatory region 686411	787 bp proximal
Rr686412	regulatory region 686412	955 bp proximal
Rr686413	regulatory region 686413	969 bp proximal
Rr686414	regulatory region 686414	1225 bp proximal
Tssr86942	transcription start site region 86942	789 bp downstream
Tssr86943	transcription start site region 86943	1114 bp upstream
Tssr86944	transcription start site region 86944	1450 bp upstream
Tssr86945	transcription start site region 86945	1476 bp upstream
Tssr91353	transcription start site region 91353	366 bp downstream
Tssr91354	transcription start site region 91354	380 bp downstream
Tssr91355	transcription start site region 91355	394 bp downstream
Tssr91356	transcription start site region 91356	401 bp downstream
Tssr91357	transcription start site region 91357	908 bp downstream
Tssr91358	transcription start site region 91358	931 bp downstream
Tssr91359	transcription start site region 91359	965 bp downstream