rs254341250 SNP Detail

Summary

• ID
  rs254341250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:62764206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCTCTTC TGCCTAGATC
  CCTATGTCCA GATGTCCTTA GGATAATGGA GAGTGTGGTT TGTTCTGGCA CAGTCCAGGT
  TACAATCTGG ATTAAGTCCT CGTCAGTTCA CTCCTGTCCA GACCCTAGAT CCCTTTTCTT
  TTCTCTGGGA AATCAAATTA CCCAATTGGA GGTGTGGCTT CAGCTGGGAA CCCCTGAAGT
  Y
  GAAACAGAGC CAGTCTCTGT GGTATAAGAG GATGCCATGT GCTGGCTCAG GAAGAGGGAC
  CCTTGGGTTG ATTACTCATG ACATTGGGAC AGATTTACTG CCTGCCCACC ACAGAAATAT
  CCCCATTCTC CAAGGATCGG GTGAGCATTA GTATTTTTCT GTATTGCAAC AACCCTCCTA
  ATGACAGAAA CAGACCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349851948	MGP_WTSI_1_62771621	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254341250					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349851948	MGP_WTSI_1_62771621	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62764206 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	within coordinates
Rr412041	regulatory region 412041	within coordinates
Tssr6998	transcription start site region 6998	749 bp upstream
Tssr6999	transcription start site region 6999	968 bp upstream
Tssr7000	transcription start site region 7000	1264 bp upstream
Tssr7001	transcription start site region 7001	1350 bp upstream
Tssr7002	transcription start site region 7002	1431 bp upstream
Tssr7003	transcription start site region 7003	1463 bp upstream
Tssr7004	transcription start site region 7004	1618 bp upstream
Tssr7005	transcription start site region 7005	1678 bp upstream
Tssr7006	transcription start site region 7006	1806 bp upstream
Tssr7007	transcription start site region 7007	1903 bp upstream
Tssr7008	transcription start site region 7008	1926 bp upstream
Tssr7009	transcription start site region 7009	1975 bp upstream