rs254341462 SNP Detail

Summary

• ID
  rs254341462
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50320643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACTACAC AGTAAGAATT ACATGCTATG
  AAATTCAGGG TTCAAGTCTT ACCAGAGAGG GAAGACAAAT CAAGTTCTCC CAGCATCCTG
  CACAGCATTA GTGAGACATT TAACTACCTC Gtttgttttg ttttgttttg ttttgttttg
  K
  tttgttttgt tttgttttat cttgtACAGC CCAAATAGAA AACATACCGG ATACTTATCG
  TTGCAAAATT CCCACTTGTT GAAAACTACT GACCCTCATT ACCATTGTAC TGAAACGCAC
  TAACAGAAAC AGAAATTCAG GGTCCATGCC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320757153	CHEV_3_50170116	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254341462					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50320643 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	218 bp downstream
Tssr33102	transcription start site region 33102	239 bp downstream
Tssr33103	transcription start site region 33103	323 bp downstream
Tssr33104	transcription start site region 33104	335 bp downstream
Tssr33105	transcription start site region 33105	396 bp downstream
Tssr33106	transcription start site region 33106	440 bp downstream
Tssr33107	transcription start site region 33107	465 bp downstream
Tssr33108	transcription start site region 33108	529 bp downstream
Tssr33109	transcription start site region 33109	594 bp downstream
Tssr33110	transcription start site region 33110	648 bp downstream
Tssr33111	transcription start site region 33111	681 bp downstream
Tssr33112	transcription start site region 33112	720 bp downstream
Tssr33113	transcription start site region 33113	766 bp downstream
Tssr33114	transcription start site region 33114	790 bp downstream
Tssr33115	transcription start site region 33115	849 bp downstream
Tssr33116	transcription start site region 33116	1254 bp downstream
Tssr33117	transcription start site region 33117	1484 bp downstream
Tssr33118	transcription start site region 33118	1511 bp downstream
Tssr33119	transcription start site region 33119	1537 bp downstream