rs254343871 SNP Detail

Summary

• ID
  rs254343871
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128656719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAATTTA GGAGGTTGAG
  GCATGAGAAC TGTTTGACCT TTCTCCAAAA CAAACAAAAA GGCAAGAGGG TCTTCGAAAT
  GACTAAGGTG GAAAAGGTAT TTGTCACCAT GCCTAAAGAC CTGAGTTGGA TCCCCAGGAC
  CCATGCAGTG GAAGGTGATA ACCAACTCCG GAAAGCTGTC TTTTGACTTC CGTACCTTCA
  K
  TTGTTAGTGT GTATACTCAC ACAAGTGGGG TTTTTACTCA GATCTTTACA TTTCAACTAA
  ATATAAAGCA GTAAGTTTAG ACTGTGAGAC CTATTTGAAG GATCGGAGGA ATCGGGAGTA
  TTTTAATTTA CTTTCTTGAG GAAGTTAGTG AATTATAAAG AGGTCACACA TACCCAGAGT
  TCCACAAGAA AGCTATTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382211293	MGP_WTSI_10_128257906	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254343871					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382211293	MGP_WTSI_10_128257906	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128656719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	604 bp proximal
Dnajc14	DnaJ heat shock protein family (Hsp40) member C14	1402 bp downstream
Ormdl2	ORM1-like 2 (S. cerevisiae)	within coordinates
Rr402366	regulatory region 402366	671 bp upstream
Rr441331	regulatory region 441331	179 bp proximal
Rr441332	regulatory region 441332	731 bp proximal
Rr441333	regulatory region 441333	1058 bp proximal
Rr441334	regulatory region 441334	1075 bp proximal
Rr441335	regulatory region 441335	1393 bp proximal
Sarnp	SAP domain containing ribonucleoprotein	914 bp upstream
Tssr96457	transcription start site region 96457	1176 bp downstream
Tssr96458	transcription start site region 96458	876 bp upstream
Tssr96459	transcription start site region 96459	895 bp upstream
Tssr96460	transcription start site region 96460	934 bp upstream
Tssr96461	transcription start site region 96461	1037 bp upstream
Tssr99967	transcription start site region 99967	726 bp downstream