rs254348480 SNP Detail

Summary

• ID
  rs254348480
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107463280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGTGAGT TCCAGGACAG
  CTAGGGATAC AGAGAAACCC TGTCTCGGAA AAACCAAAAA TAAATAAATA AATTAATTAA
  TTAATTAAAA AAAAAAAAGA CCCTATCCTA GTCCAGGCAG TGGTAATGCA CACCTTTAAT
  CCCAGTACTG GGGAGGCAGA AGCAGGTGGA TCTCTGTGAG TTTGAGGCCA TTCTGGTCTA
  C
  AGAGCAAGTT CCAGGACAGC CAGGGCTACT CAGAGAAACC CTGTCTTGAA AGTCAAAACA
  ACAAAAAGAC CCTGTCCTGG ACTAGGGAGG TATGGTGATG TACTGGGAGA TATCAGTGGT
  CCCTGGTCTA AGGACTGTTA TTCTCTGAAT GGAAGTTCTA AGAAATTACT TAGAGGCTCT
  GTTAAAAGCG CTCTACTCTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378851132	MGP_WTSI_9_107488412	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254348480					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378851132	MGP_WTSI_9_107488412	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107463280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	1337 bp proximal
Gm16343	predicted gene 16343	within coordinates
Hyal3	hyaluronoglucosaminidase 3	within coordinates
Ifrd2	interferon-related developmental regulator 2	1637 bp upstream
Rr401663	regulatory region 401663	1256 bp upstream
Rr686552	regulatory region 686552	1377 bp proximal
Rr686553	regulatory region 686553	1572 bp proximal
Tssr87008	transcription start site region 87008	1561 bp upstream
Tssr87009	transcription start site region 87009	1592 bp upstream
Tssr87010	transcription start site region 87010	1630 bp upstream
Tssr87011	transcription start site region 87011	1676 bp upstream
Tssr87012	transcription start site region 87012	1785 bp upstream