rs254359547 SNP Detail

Summary

• ID
  rs254359547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30223923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCATTGTC CGGTCAGCGC
  AGTCTACGGG GCGGGGGAGG GGATTACGGA GCGAGCGGGG GCCCGGGGCG TCACAGCCGG
  CCGCTGCGAC TCCACTGCCG GCGGGGGCTA CGGGTTCCTC CCCACCCAGC CCCGGACCCG
  CCAGCGCCGC CGCACGGGAC AGCGCCGTGG CTGGGGGGCG GCGGAGAGAG CCGCCAAGGC
  Y
  GCCAGATCTC CCCGGCTCGC ACGGCCCAGC CCCTCCTCCG CAGCTCCCCT CCCTCTCCTC
  GCCGCGCCCC CCCCCTCCGC AGGCCGAGTG GTGCGGCCCG CCTCCAGCTG ACCCGCCTGG
  AATCCCGGCT CGGAGCTCCG GACTCGCGCC CGCCTGCGCG CCCGCTCCCT CCCCCTCCCC
  CCGCCCCGCG CCCCCCGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss397979234	MGP_WTSI_17_30141894	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs254359547					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397979234	MGP_WTSI_17_30141894	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30223923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8934	CpG island 8934	within coordinates
Gm50019	predicted gene, 50019	157 bp upstream
Rr525144	regulatory region 525144	714 bp distal
Rr525145	regulatory region 525145	206 bp distal
Rr525146	regulatory region 525146	within coordinates
Rr525147	regulatory region 525147	126 bp proximal
Tssr143600	transcription start site region 143600	556 bp downstream
Tssr143601	transcription start site region 143601	430 bp downstream
Tssr143602	transcription start site region 143602	103 bp downstream
Tssr143603	transcription start site region 143603	73 bp downstream
Tssr143604	transcription start site region 143604	80 bp upstream
Tssr143605	transcription start site region 143605	830 bp upstream
Tssr143606	transcription start site region 143606	938 bp upstream
Tssr147242	transcription start site region 147242	309 bp upstream
Tssr147243	transcription start site region 147243	686 bp downstream
Zfand3	zinc finger, AN1-type domain 3	90 bp upstream