rs254359879 SNP Detail

Summary

• ID
  rs254359879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100979936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGAGGAG TGGCTGCTCT
  TTCTCATTGA GCTTTAGGGA GCCCTAGCCC AGGGCAGAAA TACCCAGGAG TCTAAGTAAA
  GAGAAGAGAA TGGCTGTCTC TGTAACAAAG CCACTGCAGA GCCATTCACC TCAGTTCTCC
  CAGGCAGACA CTCTCAACAA CAAAGAAGCC ACTTCCTCCA GCAGGGGCAT GGAGACAAAC
  R
  CCACCCATGC TTGCCCTTGC TGGCCACACT GCTGCAACCC ATCCGGCTTC CTTATAGCTG
  GGAGCTCAAG GACACTTGTC TGAGCCACAC ATCTACATGG GGCAGAATGC CCAGCACACC
  ACACACTTCC TGAGTGCAGG AAGGATTAAG CAGAGAAGCT AAATGGCATT CCTCAAGCTA
  CTTACTCACC TAGCCAGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320850824	CHEV_3_100876543	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254359879					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100979936 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				Noncoding-Transcript-Variant
Rr581952	regulatory region 581952			998 bp distal