rs254369871 SNP Detail

Summary

• ID
  rs254369871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130546502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCTACCTT GGACACAGAG GCCCCGACAC
  CTAGGCTGGT CAACACAGCT ACCTCGAGGC CACGAGCCCT TCCTCGGCCA GTCACCACCC
  AGGAGCCTGA TGTTGCTGAG AGGAGTACCC TGCCGTTGGG GACCACGGCT CCTGGACCCA
  Y
  GGAGATGGCT CAGGTGAGGA CAGTGGGTGA GGGGTTAGCG TGGGCAGAGA TGGGTTGGGC
  AGGGACCAGG AGGTACCAGG GGTGAAGTAG GCAAGGTGGG CCTAGTGTGT GTGCTGAGTG
  GGAGCCTCTG GATGGGGTTG GGGGAGGTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318846	CHEV_4_130375106	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254369871					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130546502 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	585 bp downstream
Tssr39266	transcription start site region 39266	563 bp downstream
Tssr39267	transcription start site region 39267	544 bp downstream
Tssr39268	transcription start site region 39268	514 bp downstream
Tssr39269	transcription start site region 39269	477 bp downstream
Tssr39270	transcription start site region 39270	448 bp downstream
Tssr39271	transcription start site region 39271	403 bp downstream
Tssr39272	transcription start site region 39272	387 bp downstream
Tssr39273	transcription start site region 39273	332 bp downstream
Tssr39274	transcription start site region 39274	290 bp downstream
Tssr39275	transcription start site region 39275	274 bp downstream
Tssr39276	transcription start site region 39276	238 bp downstream
Tssr39277	transcription start site region 39277	221 bp downstream
Tssr39278	transcription start site region 39278	210 bp downstream
Tssr43599	transcription start site region 43599	482 bp upstream
Tssr43600	transcription start site region 43600	439 bp upstream
Tssr43601	transcription start site region 43601	272 bp upstream