rs254371402 SNP Detail

Summary

• ID
  rs254371402
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:118341267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTACAACC GCTGACTTCT
  CAGAGGAAGC CTCAGTGCCG CTTCGCAGAG TTGAAAGACA GACTGAAGAG AAAGAAGATG
  AAGAATGGTA AGCCCATCAA TGTCAAAGAC ACTAGAATCC AGAGCTGTGT GAACAGACTC
  GAGAACTACC CCCAGATCAT GGTGCCAAAT TCTCTGCTGA CAGTATTTTT GAAGCGCCCC
  A
  CCCCACCCCA CCCCCCCCCC CCGCCGACAA TTGCCCAGAC AGAATTGACA CTTGATAGTA
  TATAATCTGC CTAATAAATT TGATTGAAAT TGTGACATTT TCAAAGTTAT TTCTAGTATC
  TCAAATTAAG CTTTAAAGGG AGAGTTCCCT TTGATTCAGC TAAATCACAA TAATTGGTTT
  TAAAGCAAAT AGAAACACAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	C3H/HeJ	C57BL/6J	CE/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss387526140	MGP_WTSI_12_119616005	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	C3H/HeJ	C57BL/6J	CE/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs254371402					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387526140	MGP_WTSI_12_119616005	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:118341267 () rs orientation: forward

Symbol	Name	Function Class
Rr369642	regulatory region 369642	119 bp downstream
Rr387826	regulatory region 387826	1580 bp downstream
Rr474222	regulatory region 474222	41 bp distal
Tssr115561	transcription start site region 115561	767 bp downstream