rs254378084 SNP Detail

Summary

• ID
  rs254378084
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89939435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGCTCT CAACCTCTGT
  TGCAGCTTTC AAAGTGTGCG CCAAGTCAGC AAGCACCGGG CTGACACCGG AACCAGGACG
  CTCTGCCACT GGATGCCGCC CAGCTGCTGC GCGGGACCGC ATGGGTACCA GAGAAGCAAA
  CGTGAATTGC AGTGTTCCCA AGGGCTCGCG CGCGTCCTTC AAAACCTGCC AGCCACCACG
  M
  AGGAAAAAGA CAGCTTAGAT TCTATCTGAC CCTAGAGAAT GGCCAGAGGA TGCCACCAGA
  AAGGGATACC CGTGGCGAGG TTCGCTCCCG GACAGCCCAT CTTGACCGAC CCCAGCAAAA
  GATATCAGCG CCTCTAGGTG CAGAAGATCT GAGAGCGTGA GGCGGGGCGG GGCTGGGCTG
  GTGCGAAGAC GTGGAATCGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397287385	MGP_WTSI_16_90142792	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	C	A	C	A	C	A	A	A	A	C	A	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254378084					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	C	A	C	A	C	A	A	A	A	C	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397287385	MGP_WTSI_16_90142792	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89939435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8419	CpG island 8419	within coordinates
Gm10789	predicted gene 10789	within coordinates
Gm56608	predicted gene, 56608	1410 bp upstream
Rr404948	regulatory region 404948	1210 bp upstream
Rr519037	regulatory region 519037	561 bp distal
Rr519038	regulatory region 519038	within coordinates
Rr519039	regulatory region 519039	98 bp distal
Rr519040	regulatory region 519040	1212 bp proximal
Rr519041	regulatory region 519041	1421 bp proximal
Tiam1	T cell lymphoma invasion and metastasis 1	within coordinates
Tssr139275	transcription start site region 139275	1435 bp upstream
Tssr142016	transcription start site region 142016	1217 bp downstream
Tssr142017	transcription start site region 142017	1234 bp downstream
Tssr142018	transcription start site region 142018	1261 bp downstream
Tssr142019	transcription start site region 142019	1282 bp downstream