rs254381019 SNP Detail

Summary

• ID
  rs254381019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158223109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGCCCT TGATGCTGTT
  GGCTCACCAG CACGGAGCAC CTTTTTACTT TGGTAGGTAT GCAGAGGGAA GGGCCTTGAC
  TCTGGAGACT TGGGGACCAA AGTTAGAGAC TCGCTAGGTC TGTCCCTCCC TTTAGAGCCA
  CAGAATGCCA CGTGGCACTG AGGTTCTTGC TCTCACAAAT AAGCACTCGG GAAACCAGCC
  R
  TGTTAAACAC GCAGGTTGTC TCTTCAAAGG GAGAGACATA TATCCTGTTT TCCTCCCAGA
  AGGCTGGGAG CGGAGGTGTT TAATATCCTG GCGAACTTTG TGCTATCTGT ATGACCAAGA
  CCATGTCAGA GCCTCCCCTA GAGCCTTAAG GTATCATCTA TAATGGGTCA GCTAGGTGGG
  GGGGGGGGGG CGCATGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356281236	MGP_WTSI_2_158206925	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254381019					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356281236	MGP_WTSI_2_158206925	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158223109 () rs orientation: forward

Symbol	Name	Function Class
Gm25129	predicted gene, 25129	1523 bp downstream
Rr397444	regulatory region 397444	1108 bp downstream
Rr568752	regulatory region 568752	1018 bp distal
Rr568753	regulatory region 568753	1262 bp distal
Rr568754	regulatory region 568754	1224 bp distal
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	188 bp upstream
Tssr21318	transcription start site region 21318	981 bp upstream
Tssr21319	transcription start site region 21319	1380 bp upstream
Tssr21320	transcription start site region 21320	1419 bp upstream
Tssr21321	transcription start site region 21321	1511 bp upstream
Tssr21322	transcription start site region 21322	1656 bp upstream
Tssr21323	transcription start site region 21323	1703 bp upstream
Tssr21324	transcription start site region 21324	1735 bp upstream
Tssr21325	transcription start site region 21325	1775 bp upstream
Tssr21326	transcription start site region 21326	1797 bp upstream
Tssr21327	transcription start site region 21327	1846 bp upstream
Tssr21328	transcription start site region 21328	1884 bp upstream
Tssr21329	transcription start site region 21329	1897 bp upstream
Tssr21330	transcription start site region 21330	1919 bp upstream