rs254394218 SNP Detail

Summary

• ID
  rs254394218
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141935265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA GGTACAGGGT ACTACACCAC
  S
  CAGACAAAGG CCAGGTAAGC AGGAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322471181	CHEV_7_149567433	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254394218					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141935265 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Rr368483	regulatory region 368483	6 bp downstream
Rr658151	regulatory region 658151	within coordinates
Tssr70137	transcription start site region 70137	730 bp downstream
Tssr70138	transcription start site region 70138	682 bp downstream
Tssr70139	transcription start site region 70139	663 bp downstream
Tssr70140	transcription start site region 70140	636 bp downstream
Tssr70141	transcription start site region 70141	615 bp downstream
Tssr70142	transcription start site region 70142	568 bp downstream
Tssr70143	transcription start site region 70143	1096 bp upstream
Tssr70144	transcription start site region 70144	1898 bp upstream
Tssr75774	transcription start site region 75774	719 bp upstream
Tssr75775	transcription start site region 75775	714 bp upstream
Tssr75776	transcription start site region 75776	693 bp upstream
Tssr75777	transcription start site region 75777	642 bp upstream
Tssr75778	transcription start site region 75778	629 bp upstream
Tssr75779	transcription start site region 75779	594 bp upstream
Tssr75780	transcription start site region 75780	578 bp upstream
Tssr75781	transcription start site region 75781	560 bp upstream
Tssr75782	transcription start site region 75782	532 bp upstream
Tssr75783	transcription start site region 75783	1088 bp downstream
Tssr75784	transcription start site region 75784	1921 bp downstream
Tssr75785	transcription start site region 75785	1941 bp downstream
Tssr75786	transcription start site region 75786	1971 bp downstream