rs254394305 SNP Detail

Summary

• ID
  rs254394305
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32734756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGTTCCG AAGAAACGCA
  GGGACAGACG CAGGAAGGAT AATCCTGCCC CTGAGGCTCC CGGAGCACCG ACCAAGGCGG
  TCAGCTAGTG CGATCCACCT GTGAGCGGTC AGCGATTGTG CTCAGCGCAC CCTCACTCGG
  CCCCAGCCTG TTGTACCTTT GCCGGGTCTC TCTGCGCTGA GGCCAAAGCC GGCGTAGCTC
  B
  GGGAGCGAGC CGCGGACACA CTGGGCATGC TCCGCGGCGT TCCCCGCCCC TGTCCCTTCC
  GACGCCCCGC CCCGCCCCGC CCCGTCCCCG GCTCAGCGCC CGCCTCCCGC CCGCCTCCCG
  CCTCCCCTCC GGCTTTCCGA GGCGCCCTGC TCTCCCGGCG GGGCGGCGGA GGGGGCGGGC
  TGGCCGGCGC ACGGTGATGT                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402294756	MGP_WTSI_19_32831846	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254394305					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402294756	MGP_WTSI_19_32831846	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32734756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10762	CpG island 10762	within coordinates
Gm36566	predicted gene, 36566	within coordinates
Gm56634	predicted gene, 56634	879 bp upstream
Gm56643	predicted gene, 56643	within coordinates
Gm58496	predicted gene, 58496	197 bp upstream
Gm58497	predicted gene, 58497	348 bp upstream
Pten	phosphatase and tensin homolog	221 bp upstream
Rr370486	regulatory region 370486	674 bp downstream
Rr405924	regulatory region 405924	1556 bp downstream
Rr546562	regulatory region 546562	1271 bp distal
Rr546563	regulatory region 546563	445 bp distal
Rr546564	regulatory region 546564	296 bp distal
Rr546565	regulatory region 546565	47 bp proximal
Tssr5485	transcription start site region 5485	128 bp upstream
Tssr5486	transcription start site region 5486	324 bp upstream
Tssr5487	transcription start site region 5487	370 bp upstream
Tssr155992	transcription start site region 155992	220 bp upstream
Tssr155993	transcription start site region 155993	248 bp upstream
Tssr155994	transcription start site region 155994	291 bp upstream
Tssr155995	transcription start site region 155995	969 bp upstream
Tssr158898	transcription start site region 158898	930 bp upstream
Tssr158899	transcription start site region 158899	18 bp upstream
Tssr158900	transcription start site region 158900	13 bp downstream