rs254405772 SNP Detail

Summary

• ID
  rs254405772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21322450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAAATT TCTAAAATAA
  CAAATGACGT CAGTTTAATA ACGACACTTG CTCTGGAGTT TTTGCTTAGA CTCTACATCC
  TCTCTGAACA GTAGAGAAAT TGTTCCAGCA GTGAATGAAC TATATTTATC AGTCAGTGTA
  AGCACTAAAA CAGAACCAAA GACCTGGGGC TCCTCATGTA AGTCAGCCTG CAAAAACTTA
  Y
  GTGCAACAAG GAATCTTTAA CTTTCCCAGG CTTATTATAT AATAGAATGG CCAGTTATTT
  TTGACTTCCA CAGAAGATTA ACAAGGGGAG AAACGATCTT TAAATCTAGC AAAAACATTT
  GGTAGTTCCT AAGAATTGGC ATCTTGATTT ATGATTGAGT AACTACTGAC ACAAAGGACA
  CAAAGAATGT TGGGCATTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382665879	MGP_WTSI_11_21272453	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254405772					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382665879	MGP_WTSI_11_21272453	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21322450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2630	CpG island 2630	687 bp distal
Gm12043	predicted gene 12043	within coordinates
Rr243512	regulatory region 243512	1693 bp proximal
Rr246416	regulatory region 246416	449 bp distal
Rr402440	regulatory region 402440	1012 bp downstream
Tssr3440	transcription start site region 3440	1672 bp upstream
Tssr3441	transcription start site region 3441	1644 bp upstream
Tssr3442	transcription start site region 3442	1424 bp downstream
Tssr100572	transcription start site region 100572	1713 bp downstream
Tssr107064	transcription start site region 107064	1965 bp upstream
Tssr107065	transcription start site region 107065	1867 bp upstream
Tssr107066	transcription start site region 107066	1794 bp upstream
Tssr107067	transcription start site region 107067	1777 bp upstream
Tssr107068	transcription start site region 107068	1761 bp upstream
Tssr107069	transcription start site region 107069	1229 bp upstream
Tssr107070	transcription start site region 107070	1174 bp upstream
Ugp2	UDP-glucose pyrophosphorylase 2	1249 bp upstream