rs254415812 SNP Detail

Summary

• ID
  rs254415812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30753744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCTAAA ACAAATGAGA
  ATCATAAGTC ACCGTGAGTG TTCTCCCTGC TTGTGTCTTA AACAAGGTTC TTTGCAGGGA
  TAATAGACAC TCACTACATA GCCACAGGGG ACCAGGAGAG GGACAAACCA GAGGCAGTGG
  GGTGTGTGTA GCACCTCTAC CCCTGGCCTC TTGGCCCTCC CCACTCTTTC TTTGCCTTCC
  Y
  AATGTTCTGA AATGCAGGTT GAGAGGAGGA AAGAACTCCT CAGAACAGTG AACCATACCA
  CACACATGAA AGAGATCGCT TATTACTTTT TTATTAACTT CAGCCCACAG CTTCCTCAAA
  GACAGCTCCC AGGACTCCAG AATCTCAGTG CTTTTGAACA CGAACTAGAT TTCTCAGATT
  TCCTCCTCCT CAGGAAAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325132331	CHEV_16_30935012	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254415812					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30753744 () rs orientation: forward

Symbol	Name	Function Class
C330004M20Rik	RIKEN cDNA C330004M20 gene	78 bp downstream
Gm46565	predicted gene, 46565	within coordinates
Gm61246	predicted gene, 61246	720 bp upstream
Rr514366	regulatory region 514366	1208 bp distal
Rr514367	regulatory region 514367	within coordinates
Rr514368	regulatory region 514368	693 bp proximal
Rr514369	regulatory region 514369	1207 bp proximal
Tssr140722	transcription start site region 140722	1510 bp upstream
Tssr140723	transcription start site region 140723	1418 bp upstream