rs254419561 SNP Detail

Summary

• ID
  rs254419561
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127272563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGCTCAA CAGCCACATG
  TGTTCCAGAT CCGAACATGG CAGCATCTAG GCAGACATGG GCCTGGAGGA GCCAAGAGTA
  CCACATCTTG TTCTGAAGGT AGCTAGAAGA TTGGATTACA GGCAGTTAGG ATGAAAGTCT
  TAGAGACCAC ATCCACAGGG ACACACTTCC TCCAACAAGG CTACACCTCC TCCAACAAGG
  S
  CACACCTCCT ACTAGTGCCA CTCCCTGGAC CAAGCATATA CAAACCAGCC CAGTATCTTA
  ATCATTATCT ATATTGTATA CCACAGCTTC TCTCTGAATT ATGTCTTATT TAATTTTACA
  TAAACTCTAT AAACTTAAAC TGGATATTTA TAAACACCGA AAGAAAACTG GTCTTATCAT
  CTATTTCCAG CAAATTGTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320954473	CHEV_3_127181832	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254419561					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127272563 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	1265 bp downstream
Gm43355	predicted gene 43355	521 bp downstream