rs254420325 SNP Detail

Summary

• ID
  rs254420325
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:38301212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC TCCGTGACGC CCCTCGCCCA
  T
  CCCTAGCCTT CAGTCCTCCG CCCAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324928917	CHEV_15_38230723	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254420325					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:38301212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7049	CpG island 7049	within coordinates
Gm35248	predicted gene, 35248	within coordinates
Klf10	Kruppel-like transcription factor 10	262 bp upstream
Rr501355	regulatory region 501355	1962 bp distal
Rr501356	regulatory region 501356	1396 bp distal
Rr501357	regulatory region 501357	281 bp distal
Rr501358	regulatory region 501358	87 bp distal
Rr501359	regulatory region 501359	58 bp proximal
Rr501360	regulatory region 501360	586 bp proximal
Rr501361	regulatory region 501361	594 bp proximal
Tssr4579	transcription start site region 4579	679 bp downstream
Tssr131113	transcription start site region 131113	1602 bp downstream
Tssr131114	transcription start site region 131114	1454 bp downstream
Tssr131115	transcription start site region 131115	575 bp downstream
Tssr131116	transcription start site region 131116	224 bp upstream
Tssr134124	transcription start site region 134124	1275 bp upstream
Tssr134125	transcription start site region 134125	297 bp upstream
Tssr134126	transcription start site region 134126	253 bp upstream